Multi-omic mass spectrometry profiling of 19 single gene deletion yeast strains

Replicate Name | Condition Name | Set Name | Branch Name | Molecule Name | Molecule Identifier | Replicate Quant Value | Avg. Quant Value | SD Quant Value | CV Quant Value | All Quant Values | Fold Change (Mean Normalized) | P-Value (Mean Normalized) | FDR-adjusted Q-Value (Mean Normalized) | Bonferroni-adjusted P-Value (Mean Normalized) | Fold Change (Control Normalized) | P-Value (Control Normalized) | FDR-adjusted Q-Value (Control Normalized) | Bonferroni Adjusted P-Value (Control Normalized) |
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**Figure Legend: **Fold changes in {{displayMolecule}} abundance log_{2}(condition/control) versus statistical significance (-log_{10}[*p*-value]) are shown above. The red data point ({{displayMolecule}} changes in {{displayCondition}}) was identified as a characteristic outlier by the {{algorithm.name}} algorithm.

Molecule Name | Regulation | Condition | Distance | Fold Change | P-Value |
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**Figure Legend: **Fold changes in molecule abundance (condition/control) versus statistical significance (-log_{10}[*p*-value]).

● *P* < {{pValueCutoff}} and |log_{2}(fold change)| > {{foldChangeCutoff}}

● *P* < {{pValueCutoff}} and |log_{2}(fold change)| < {{foldChangeCutoff}}

● *P* > {{pValueCutoff}}

**Figure Legend: **Log_{2} fold changes in {{selectedMolecule.name}} abundance (log_{2}[condition/control]) are displayed along the x-axis. Error bars represent ±1 standard deviation.

■* P* < {{pValueCutoff}} and |log_{2}(fold change)| > {{foldChangeCutoff}}

■ *P* < {{pValueCutoff}} and |log_{2}(fold change)| < {{foldChangeCutoff}}

■ *P* > {{pValueCutoff}}

**Figure Legend: **Comparison of fold changes in molecule abundance (log_{2}[condition/control]) for all molecules quantified accross {{condOne.condition_name}} and {{condTwo.condition_name}}. The Pearson coefficient is reported as a metric of profile similarity.

● *P* < {{pValueCutoff}} and |log_{2}(fold change)| > {{foldChangeCutoff}} in both {{condOne.condition_name}} and {{condTwo.condition_name}}.

● *P* < {{pValueCutoff}} and |log_{2}(fold change)| > {{foldChangeCutoff}} in only {{condOne.condition_name}}.

● *P* < {{pValueCutoff}} and |log_{2}(fold change)| > {{foldChangeCutoff}} in only {{condTwo.condition_name}}.

**Figure Legend: **Principal components analysis (PCA) of all profiled conditions in the '{{pcaBranch.branch_name}}' branch. PCA was performed using averaged log_{2} fold changes of molecules quantified across all {{condCount}} conditions.

**Figure Legend: **Principal components analysis (PCA) of all profiled replicates in the '{{pcaBranch.branch_name}}' branch. PCA was performed using log_{2} abundances of molecules quantified across all {{repCount}} replicates.